The controversy chiefly turned on the question of the necessity of episcopacy.
As one of the three principal systems of ecclesiastical polity known to the Christian Church, Presbyterianism occupies an intermediate position between episcopacy and congregationalism.
In episcopacy the supreme authority is a diocesan bishop; in congregationalism it is the members of the congregation assembled in church meeting; in Presbyterianism it is a church council composed of representative presbyters.
In episcopacy the control of church affairs is almost entirely withdrawn from the people; in congregationalism it is almost entirely exercised by the people; in Presbyterianism it rests with a council composed of duly appointed office-bearers chosen by the people.
The ecclesiastical unit in episcopacy is a diocese, comprising many churches and ruled by a prelate; in congregationalism it is a single church, self-governed and entirely independent of all others; in Presbyterianism it is a presbytery or council composed of ministers and elders representing all the churches within a specified district.